Templeejlersen9742

Protein-DNA interactions are important for all biological processes and involve the process of proteins searching for and recognizing specific binding sites on the DNA. Many aspects of the mechanism of the protein search for targets on DNA are not well understood. Selleckchem IDF-11774 One important problem is the effect of DNA conformation on the protein search dynamics. Using a theoretical method based on a discrete-state stochastic approach, we obtained an analytical description of the dynamic properties. We investigated a system with two DNA conformers. It was found that the average search time on one DNA conformer via 1D or 3D motions depended on the dynamics of the search process on the other DNA conformer.Smart biocatalysts, in which enzymes are conjugated to stimuli-responsive polymers, have gained considerable attention because of their catalytic switchability and recyclability. Although many systems have been developed, they require separate laboratory techniques for their recovery, making them unsuitable for many practical applications. To address these issues, we designed a thermomagneto-responsive biocatalyst by immobilizing an enzyme on the terminal of thermo-responsive polymer brushes tethered on magnetic nanoparticle (NP) clusters. The concept is demonstrated by a system consisting of iron oxide NPs, poly(N-isopropyl-acrylamide), and a malonyl-Coenzyme A synthetase (MatB). By using free malonate and coenzyme A (CoA), the designed catalyst exhibits adequate activity for the production of malonyl-CoA. Thanks to the use of a magnetic NP cluster, whose magnetic moment is high, this system is fully recoverable under the magnetic field at above 32 °C because of the collapse of the thermo-responsive polymer shell in the clusters. In addition, the recycled catalyst maintains moderate activity even after three cycles, and it also shows excellent catalytic switchability, that is, negligible catalytic activity at 25 °C because of the blockage of the active sites of the enzyme by the extended hydrophilic polymer chains but great catalytic activity at a temperatures above the lower critical solution temperature at which the enzymes are exposed to the reaction medium because of the thermo-responsive contraction of polymer chains. Because the azide functionality in our system can be easily functionalized depending upon our need, such catalytically switchable, fully recoverable, and recyclable multiresponsive catalytic systems can be of high relevance for other cell-free biosynthetic approaches.A portable and highly reproducible lab-on-capillary surface-enhanced Raman scattering (SERS) platform was developed using a specially designed homemade device for rapid on-site SERS measurement. In particular, this platform was composed of a capillary with a tiny orifice, which allows an effective and lossless sample extraction, resulting in high SERS performance. The capillary-based plasmonic substrate was prepared by compactly assembling Au@Ag core-shell nanorods (NRs) embedded with the 4-mercaptobenzoic acid (4-MBA) molecule as an internal standard onto the inner wall of a capillary tube. The fabrication process is facile and convenient with no requirement for complicated procedures. The exclusively prepared nanoparticles were able to significantly improve the signal consistency and overcome the limitations of reliable quantitative SERS analysis compared with conventional methods. Importantly, it was found that this capillary-based substrate with higher sensitivity was essentially attributed to more valid nanoparticles in the effective laser excitation region derived from the unique structure of the capillary. Furthermore, the applicability of the Au@4-MBA@Ag nanorod-decorated capillary for the quantitative identification of fungicides (malachite green and crystal violet) on the shell was demonstrated. As a result, this proposed lab-on-capillary sensor holds promising practical potential for rapid on-site analysis, especially for various contaminants on an uneven surface.Compared with semiconductor quantum dots and organic chromophores, carbon dots (CDs)-based lysosome probe with strong emission, an intrinsic targeting ability and easy synthesis procedure was urgently desired in visualization imaging studies. Herein, we showed that it was possible to produce CDs with desired properties for lysosome imaging via a one-step hydrothermal treatment of commercial reagents, rose bengal (RB) and branched polyethyleneimine (bPEI). The prepared P-R CDs had a high fluorescence quantum yield (FLQY) of 90.49%, a narrow emission band of 30 nm, negligible phototoxicity and dark toxicity. Moreover, P-R CDs had an intrinsic lysosome targeting ability without any post-modification ligands. Long-term cell imaging displayed P-R CDs can anchor lysosomes for up to 48 h without leakage. In addition, experimental results confirmed that dehalogenation crosslinking and structural reorganization of reactants were the main causes of the ultrahigh photoluminescence efficiency, low cytotoxicity and passivated surface of the P-R CDs. This origin was attributed to the restricted intersystem crossing and nonradiative transition, the reduced production of singlet oxygen, and suitable -NH2 functional groups. Due to outstanding characteristics, P-R CDs may be developed for a promising tool in lysosome image. The concept of facile preparation will also pave a new avenue for developing ultrabright functional nanomaterial markers.Aptamers have been widely used as recognition elements in electrochemical sensors. However, as the most expensive consumable, the aptasensors regeneration is still a critical challenge for sustainable feasibility and attracting great interest from researchers, due to the high affinity between the aptamers and their targets (the dissociation constant Kd is low to subnanomolar or nanomolar). In this work, we propose a photochromic five-azobenzene-inserted thrombin-aptamer based aptasensor to improve the regenerativity. With ultraviolet light exposure, the trans-structure of azobenzene changes to cis-structure, and open the folded aptamer to realize the aptasensor regeneration. The limit of detection can be sensitive to 3 pM (S/N = 3). The thrombin concentrations were detected to be 2.48 ± 0.02 and 20.26 ± 0.98 nM (n = 3) in duck whole blood and blood serum, respectively. Utilizing surface plasmon resonance, we demonstrated that the certain azobenzene moieties can exactly increase Kd of aptamer-thrombin bounding.