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The final adaptation of standardized cultivation methods included increasing the standard incubation temperature from 36 °C to 42 °C, which effectively inhibits the environmental background flora on agar plates while the desired target species survive. selleck compound This enables the detection of target species in suitable sample volumes. Putative target colonies which belong to the remaining background flora had to be excluded by morphological and physiological differentiation. Therefore, a time and cost optimized testing scheme with good performance was developed, which allows an effective exclusion of non-target isolates in samples. Depending on the target species and sample type, sensitivity of up to 100% is achieved, and specificity ranges from 91.1% to 99.7%, while the positive predictive value, negative predicted value and accuracy rate are always >90%.The high biotic diversity supported by floodplains is ruled by the interplay of geomorphic and hydrological processes at various time scales, from daily fluctuations to decennial successions. Because understanding such processes is a key question in river restoration, we attempted to model changes in taxonomic richness in an assemblage of 58 macroinvertebrate taxa (21 gastropoda and 37 ephemeroptera, plecoptera and trichoptera, EPT) along two successional sequences typical for former braided channels. Individual models relating the occurrence of taxa to overflow and backflow durations were developed from field measurements in 19 floodplain channels of the Rhône floodplain (France) monitored over 10 years. The models were combined to simulate diversity changes along a progressive alluviation and disconnection sequence after the reconnection with the main river of a previously isolated channel. Two scenarios were considered (i) an upstream + downstream reconnection creating a lotic channel, (ii) a downstream reconnection creating a semi-lotic channel. Reconnection led to a direct increase in invertebrate richness (on average x2.5). However, taxonomical richness showed a constant decrease as isolation progressed and reached an average of 2 for EPT and 7 for gastropods at the end of the scenarios. With more than 80% of the taxonomic models with an AUC equal or higher than 0.7 and slopes of linear relations between observed and predicted richness of 0.75 (gastropods) and 1 (EPT), the Boosted Regression Trees (BRT) provided a good basis for prediction of species assemblages. These models can be used to quantify a priori the sustainability and ecological efficiency of restoration actions and help floodplain restoration planning and management.Drinking water governance is challenging with different perceptions and priorities among stakeholders in different countries. To make provision for drinking water protection in agricultural areas, governance systems need to be mapped for bottlenecks to be identified and solutions highlighted. To address this a system thinking approach was used in an explanatory network analysis of Fuzzy Cognitive Maps (FCM) that were created during face to face interviews with stakeholder representative groups (individuals, policy developers, researchers, and regulators). Two exercises were designed and facilitated to obtain stakeholder maps on A) the water governance framework from stakeholders' own perspective with a ranking of actors in terms of their perceived importance and B) a list of importance factors and how these were connected for the provision of good drinking water quality supplies in agricultural areas. Causal relationships were subsequently drawn around each subject allowing mapping. A graph theory Hierarchy Iesentative group showed a democratic outlook whereas all others had a hierarchal outlook. Scenario testing of policy options enabled bottlenecks and possible solutions to be identified. By boosting "Farmers behaviour and belief" to the highest possible level, resulted in a large increase in other factors - a scenario where farmers could benefit from the outcome. This would be achieved by enhancing farmers' willingness and intention to participate and implement BMPs. Better results would be achieved if farmers believed in the method and could benefit from the outcome. Also keeping "Farmers knowledge" at the highest point had a positive influence on the other factors. This can be achieved by enhancing farmers training and knowledge transfer by local and national actors. This method is widely applicable and should be considered for more integrated and participatory approaches to drinking water governance.This study explores the variation of liquid manure temperature (Tm) and CH4 emissions associated with contrasting regional climates, inter-annual weather variation, and manure storage emptying. As a case-study, six regions across Canada were used, spanning 11°32' latitude and 58°30' longitude. Annual average air temperatures ranged from 3.9 °C (prairie climate) to 10.5 °C (maritime climate), with an overall average of 6.6 °C. A model predicted Tm over 30 years, using daily weather (1971-2000), and over one "normal" year (30-year average weather). Modelled Tm was then used in Manure-DNDC to model daily CH4 emissions. Two manure storage emptying scenarios were simulated (i) early spring and autumn, or (ii) late spring and autumn. Regional differences were evident as average Tm ranged from 8.9 °C to 14.6 °C across the six locations. Early removal of stored manure led to warmer Tm in all regions, and the most warming occurred in colder regions. Regional climate had a large effect on CH4 emissions (e.g. 1.8× greater in the pacific maritime and great lakes regions than the prairie region). Inter-annual weather variability led to substantial variation in inter-annual CH4 emissions, with coefficient of variation being as high as 20%. The large inter-annual range suggests that field measurements of CH4 emissions need to compare the weather during measurements to historical normals. Early manure storage emptying reduced CH4 emissions (vs late removal) in some regions but had little effect or the opposite effect in other regions. Overall, the results from this modelling study suggest i) Tm differs substantially from air temperature at all locations, ii) accurate estimates of manure storage CH4 emissions require region-specific calculations using Tm (e.g. in emission inventories), iii) field measurements of CH4 emissions need to consider weather conditions relative to climate normal, and iv) emission mitigation practices will require region-specific measurements to determine impacts.

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