Matthewsbengtsen9220

Our studies also show local conformational changes in the peptide backbone during incorporation of GalNAc residues, which might explain GalNAc-T2/T3/T4 fine specificities toward the MUC1 substrate. Interestingly, we postulate that a specific salt-bridge and the inverse γ-turn conformation of the PDTRP sequence in MUC1 are the main structural motifs behind the GalNAc-T4 specificity toward this region. In addition, in-cell analysis shows that the GalNAc-T4 isoform is the only isoform glycosylating the Thr of the immunogenic epitope PDTRP in vivo, which highlights the relevance of GalNAc-T4 in the glycosylation of this epitope. Finally, the NMR methodology established herein can be extended to other glycosyltransferases, such as C1GalT1 and ST6GalNAc-I, to determine the specificity toward complex mucin acceptor substrates.Construction of higher C≥2 compounds from CO2 constitutes an attractive transformation inspired by nature's strategy to build carbohydrates. However, controlled C-C bond formation from carbon dioxide using environmentally benign reductants remains a major challenge. learn more In this respect, reductive dimerization of CO2 to oxalate represents an important model reaction enabling investigations on the mechanism of this simplest CO2 coupling reaction. Herein, we present common pitfalls encountered in CO2 reduction, especially its reductive coupling, based on established protocols for the conversion of CO2 into oxalate. Moreover, we provide an example to systematically assess these reactions. Based on our work, we highlight the importance of utilizing suitable orthogonal analytical methods and raise awareness of oxidative reactions that can likewise result in the formation of oxalate without incorporation of CO2. These results allow for the determination of key parameters, which can be used for tailoring of prospective catalytic systems and will promote the advancement of the entire field.Iron oxide and hafnium oxide nanocrystals are two of the few successful examples of inorganic nanocrystals used in a clinical setting. Although crucial to their application, their aqueous surface chemistry is not fully understood. The literature contains conflicting reports regarding the optimum binding group. To alleviate these inconsistencies, we set out to systematically investigate the interaction of carboxylic acids, phosphonic acids, and catechols to metal oxide nanocrystals in polar media. Using nuclear magnetic resonance spectroscopy and dynamic light scattering, we map out the pH-dependent binding affinity of the ligands toward hafnium oxide nanocrystals (an NMR-compatible model system). Carboxylic acids easily desorb in water from the surface and only provide limited colloidal stability from pH 2 to pH 6. Phosphonic acids, on the other hand, provide colloidal stability over a broader pH range but also feature a pH-dependent desorption from the surface. They are most suited for acidic to neutral environments (pH less then 8). Finally, nitrocatechol derivatives provide a tightly bound ligand shell and colloidal stability at physiological and basic pH (6-10). Whereas dynamically bound ligands (carboxylates and phosphonates) do not provide colloidal stability in phosphate-buffered saline, the tightly bound nitrocatechols provide long-term stability. We thus shed light on the complex ligand binding dynamics on metal oxide nanocrystals in aqueous environments. Finally, we provide a practical colloidal stability map, guiding researchers to rationally design ligands for their desired application.Biologically derived metal-organic frameworks (Bio-MOFs) are significant, as they can be used in cutting-edge biomedical applications such as targeted gene delivery. Herein, adenine (Ade) and unnatural amino acids coordinate with Zn2+ to produce biocompatible frameworks, KBM-1 and KBM-2, with extremely defined porous channels. They feature an accessible Watson-Crick Ade face that is available for further hydrogen bonding and can load single-stranded DNA (ssDNA) with 13 and 41% efficiency for KBM-1 and KBM-2, respectively. Treatment of these frameworks with thymine (Thy), as a competitive guest for base pairing with the Ade open sites, led to more than 50% reduction of ssDNA loading. Moreover, KBM-2 loaded Thy-rich ssDNA more efficiently than Thy-free ssDNA. These findings support the role of the Thy-Ade base pairing in promoting ssDNA loading. Furthermore, theoretical calculations using the self-consistent charge density functional tight-binding (SCC-DFTB) method verified the role of hydrogen bonding and van der Waals type interactions in this host-guest interface. KBM-1 and KBM-2 can protect ssDNA from enzymatic degradation and release it at acidic pH. Most importantly, these biocompatible frameworks can efficiently deliver genetic cargo with retained activity to the cell nucleus. We envisage that this class of Bio-MOFs can find immediate applicability as biomimics for sensing, stabilizing, and delivering genetic materials.The paradigmatic disordered protein tau plays an important role in neuronal function and neurodegenerative diseases. To disentangle the factors controlling the balance between functional and disease-associated conformational states, we build a structural ensemble of the tau K18 fragment containing the four pseudorepeat domains involved in both microtubule binding and amyloid fibril formation. We assemble 129-residue-long tau K18 chains with atomic detail from an extensive fragment library constructed with molecular dynamics simulations. We introduce a reweighted hierarchical chain growth (RHCG) algorithm that integrates experimental data reporting on the local structure into the assembly process in a systematic manner. By combining Bayesian ensemble refinement with importance sampling, we obtain well-defined ensembles and overcome the problem of exponentially varying weights in the integrative modeling of long-chain polymeric molecules. The resulting tau K18 ensembles capture nuclear magnetic resonance (NMR) chemical shift and J-coupling measurements. Without further fitting, we achieve very good agreement with measurements of NMR residual dipolar couplings. The good agreement with experimental measures of global structure such as single-molecule Förster resonance energy transfer (FRET) efficiencies is improved further by ensemble refinement. By comparing wild-type and mutant ensembles, we show that pathogenic single-point P301L, P301S, and P301T mutations shift the population from the turn-like conformations of the functional microtubule-bound state to the extended conformations of disease-associated tau fibrils. RHCG thus provides us with an atomically detailed view of the population equilibrium between functional and aggregation-prone states of tau K18, and demonstrates that global structural characteristics of this intrinsically disordered protein emerge from its local structure.In the pursuit of a decarbonized society, electrocatalytic CO2 conversion has drawn tremendous research interest in recent years as a promising route to recycling CO2 into more valuable chemicals. To achieve high catalytic activity and selectivity, nanocatalysts of diverse structures and compositions have been designed. However, the dynamic structural transformation of the nanocatalysts taking place under operating conditions makes it difficult to study active site configurations present during the CO2 reduction reaction (CO2RR). In addition, although recognized as consequential to the catalytic performance, the reaction microenvironment generated near the nanocatalyst surface during CO2RR and its impact are still an understudied research area. In this Perspective, we discuss current understandings and difficulties associated with investigating such dynamic aspects of both the surface reaction site and its surrounding reaction environment as a whole. We further highlight the interactive influence of the structural transformation and the microenvironment on the catalytic performance of nanocatalysts. We also present future research directions to control the structural evolution of nanocatalysts and tailor their reaction microenvironment to achieve an ideal catalyst for improved electrochemical CO2RR.The impact of reduction post-treatment and phase segregation of cobalt iron oxide nanowires on their electrochemical oxygen evolution reaction (OER) activity is investigated. A series of cobalt iron oxide spinel nanowires are prepared via the nanocasting route using ordered mesoporous silica as a hard template. The replicated oxides are selectively reduced through a mild reduction that results in phase transformation as well as the formation of grain boundaries. The detailed structural analyses, including the 57Fe isotope-enriched Mössbauer study, validated the formation of iron oxide clusters supported by ordered mesoporous CoO nanowires after the reduction process. This affects the OER activity significantly, whereby the overpotential at 10 mA/cm2 decreases from 378 to 339 mV and the current density at 1.7 V vs RHE increases by twofold from 150 to 315 mA/cm2. In situ Raman microscopy revealed that the surfaces of reduced CoO were oxidized to cobalt with a higher oxidation state upon solvation in the KOH electrolyte. The implementation of external potential bias led to the formation of an oxyhydroxide intermediate and a disordered-spinel phase. The interactions of iron clusters with cobalt oxide at the phase boundaries were found to be beneficial to enhance the charge transfer of the cobalt oxide and boost the overall OER activity by reaching a Faradaic efficiency of up to 96%. All in all, the post-reduction and phase segregation of cobalt iron oxide play an important role as a precatalyst for the OER.The preparation of a new class of alkenyl cyclopropyl diols, easily available through a copper-catalyzed carbometalation reaction of cyclopropenes, has enabled the study of key mechanistic aspects of the tandem Heck-cyclopropane ring-opening reaction. Utilizing these substrates containing two distinct hydroxyl groups allowed us to examine parameters affecting the reaction outcome and selectivity. The combination of these experimental results with detailed DFT studies shed light on the mechanism governing the regio- and stereoselectivity of the cyclopropane ring-opening. A thorough investigation displayed the dual roles fulfilled by the hydroxyl group during the reaction, which is key to this remarkable transformation. In addition to its mechanistic implication, the reaction granted access to various lactones possessing up to four stereocenters as a single diastereomer, conveniently prepared in only two catalytic steps from easily accessible achiral cyclopropenes.The catalytic hydrodeoxygenation (HDO) of carbonyl oxygen in esters using H2 is an attractive method for synthesizing unsymmetrical ethers because water is theoretically the sole coproduct. Herein, we report a heterogeneous catalytic system for the selective HDO of esters to unsymmetrical ethers over a zirconium oxide-supported platinum-molybdenum catalyst (Pt-Mo/ZrO2). A wide range of esters were transformed into the corresponding unsymmetrical ethers under mild reaction conditions (0.5 MPa H2 at 100 °C). The Pt-Mo/ZrO2 catalyst was also successfully applied to the conversion of a biomass-derived triglyceride into the corresponding triether. Physicochemical characterization and control experiments revealed that cooperative catalysis between Pt nanoparticles and neighboring molybdenum oxide species on the ZrO2 surface plays a key role in the highly selective HDO of esters. This Pt-Mo/ZrO2 catalyst system offers a highly efficient strategy for synthesizing unsymmetrical ethers and broadens the scope of sustainable reaction processes.