Healybusch1978

Aspergillus cristatus are the dominantly present microorganisms in dark tea. The whole mitochondrial genome sequence of A. cristatus was sequenced and reported in this study. The mitochondrial genome in A. cristatushas a full length of 77,649 bp, which is reported to be the longest among the mitochondrial genomes of Aspergillus species. The basesincluding A (34.14％), T (37.64％), C (15.61％) and G (12.61％) are found in their genome. A total of 42 genes (15 protein-coding genes, lrRNA/srRNA and 25 tRNAs) are encoded by the mitochondrial genome of this fungus. Phylogenetic analysis showed a closest relationship betweenA. pseudoglaucusand the taxonomic status of A. cristatus.In this study, the complete mitochondrial genome of Cynoglossus nanhaiensis was determined. The total length of the mitochondrial genome is 17,130 bp, including 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and two noncoding regions. The gene rearrangement of tRNAGln gene and control region (CR) were detected, forming a unique gene order of CR-Ile-Gln-Met. Maximum-likelihood and Bayesian inference method are used to perform the phylogenetic analysis, and the result reveals a close relationship between C. nanhaiensis and Cynoglossus itinus.Bambusa subtruncata is found in Xinyi county, Maoming city, Guangdong province, China. In the current study, we sequenced the complete chloroplast genome of B. subtruncata and reported for the first time. The genome was 139,444 bp in total length, including a large single-copy (LSC) region of 82,956 bp, a small single-copy (SSC) region of 12,897 bp, and a pair of invert repeats (IR) regions of 21,798 bp. Plastid genome comprised of 127 genes in total; 82 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis based on 25 chloroplast genomes indicates that B. subtruncata is closely related to Bambusa emeiensis in Bambusodae.In this study, the complete mitochondrial genome of Meira sp. was sequenced and assembled. The complete mitochondrial genome of Meira sp. has 15 protein-coding (PCG) genes, 2 ribosomal RNA (rRNA) genes, and 22 transfer RNA (tRNA) genes. The mitochondrial genome of Meira sp. has a total size of 23,353 bp, with the base composition as follows A (30.62%), T (32.82%), G (17.84%) and C (18.73%). Phylogenetic analysis indicated that the mitogenome of Meira sp. exhibited a close relationship with the mitogenome of Jaminaea angkorensis.Selaginella involvens distributed in East Asia region including China used as traditional medicine, which is an important medicinal plant for preventing and treating asthma. The complete chloroplast genome sequence of S. involvens was characterized from Illumina pair-end sequencing. The chloroplast genome of S. involvens was 126,340 bp in length, containing a large single-copy region (LSC) of 53,214 bp, a small single-copy region (SSC) of 47,561 bp, and two inverted repeat (IR) regions of 12,796 bp. The overall GC content is 38.70%, whereas the corresponding values of the LSC, SSC, and IR regions are 36.2%, 31.9%, and 43.2%, respectively. The genome contains 80 complete genes, including 61 protein-coding genes (45 protein-coding gene species), nine tRNA genes (six tRNA species), and eight rRNA genes (four rRNA species). The Neighbour-joining phylogenetic analysis showed that S. involvens and Selaginella tamariscina clustered together as sisters to other Salvia species.Malus toringoides belongs to the Malus genus (Rosaceae) and is a precious resource among wild plants. In this study, we report the first complete chloroplast (cp) genome sequence of M. toringoides. The whole cp genome contains 126 genes, 83 protein-coding genes, 35 tRNA genes, and eight rRNA genes. A maximum-likelihood phylogenetic tree analysis based on 12 complete chloroplast genomes indicated that M. toringoides clustered closely with Malus hupehensis. Thus, the chloroplast genome can provide valuable genetic information for the protection and exploitation of M. toringoides.Apocynum venetum (A. venetum) has high medicinal value that belongs to the family Apocynaceae. Here, we reported the complete chloroplast (cp) genome of A. venetum, which was 150,858 bp in length. The cp genome was characterized by a typical quadripartite structure composed of a large single-copy region (LSC 81,919 bp) and a small single-copy region (SSC 17,257 bp) interspersed by a pair of 25,841 bp inverted repeat regions (IRs), and it contained 86 protein-coding genes, eight rRNAs, and 37 tRNAs. A maximum-likelihood (ML) phylogenetic tree indicated that A. venetum was closely related to Trachelospermum jasminoides.Aclees cribratus Gyllenhyl (Coleoptera Curculionidae) is an important pest of fig. In this study, the complete mitogenome of A. cribratus was determined, which was 17,329 bp in length and contained 37 genes, including 13 protein-coding genes (PCGs), 2 rRNA, 22 tRNA genes, and 2 control regions. The phylogenetic analysis based on mitogenomes showed that A. cribratus is the sister group of Molytinae.Thymus mongolicus is well-known spice plant and resource of traditional Chinese herbal medicine, belonging to the Thymus of the Labiatae family. In this study, the whole chloroplast genome of the T. mongolicus was sequenced, assembled and annotated, which contains 134 unique genes, including 89 protein-coding genes, 37 tRNA genes and 8 rRNA genes. A maximum likelihood phylogenetic tree based on 21 complete chloroplast genomes revealed that T. mongolicus is closely related to Mentha genus. The chloroplast genome could be used for species, varieties and medicinal materials identification, genetic engineering and Labiatae germplasm resources protection.Cladobotryum mycophilum is the causal agent of cobweb disease in many important mushroom crops. In this study, we report the complete mitochondrial genome of C. mycophilum for the first time. The genome is 78,729 bp long and comprises 52 protein-coding genes (PCGs), 2 ribosomal RNA genes (rRNA), and 26 transfer RNA (tRNA) genes. The nucleotide composition of C. mycophilum mitochondrial genome is as follows A (38.06%), T (34.68%), C (12.19%), and G (15.07%). Phylogenetic analysis revealed that C. MK0683 mycophilum had a close relationship with Cladobotryum varium from Hypocreaceae. This study provided a basis for studies of the mitochondrial evolution of Hypocreaceae.In the present study, the complete mitochondrial genome of T. szidati was assembled by next generation sequencing (NGS). We found that the complete mitochondrial genome of T.szidati is 14, 303 bp in length and consists of 3023 (21.1%) adenine, 1153 (8.1%) cytosine, 3432 (24.0%) guanosine and 6695 (46.8%) thymine. The genome contains 12 conserved core protein-coding genes (atp6, cox1, cox2, cox3, nad1, nad2, nad3, nad4, nad4L, nad5, nad6, CYTB), 21 tRNA genes, 2 rRNA genes and 1 D-loop region. Phylogenetic analysis showed that T. szidati has a close relationship with T. regent. Knowledge of mitochondrial genome of T. szidati could provide useful information for the further studies of evolutionary biology, epidemiology and species identification.The complete chloroplast genome of Russian sage Salvia yangii B. T. Drew was assembled in this study. The genome is 151,473 bp in length and contained 129 encoded genes in total, including 84 protein-coding genes, eight ribosomal RNA genes, and 37 transfer RNA genes. The result of phylogenetic analysis based on 15 chloroplast genomes revealed that S. yangii is closely related to common sage (Salvia officinalis) in Lamiaceae.The yellow tip butterfly Anthocharis scolymus (Lepidoptera Pieridae) has a circular mitochondrial genome of 15,230 bp in size. It consists 13 protein-coding genes, 22 tRNAs, two ribosomal RNA genes, and an AT-rich control region. Using whole mitogenome alignments, we reconstructed the phylogenetic relationships of 28 pierid butterflies. The maximum-likelihood (ML) tree topology was consistent with previous studies.Bupleurum falcatum has a long history of use in traditional oriental medicine. The first complete mitochondrial genome sequences of B. falcatum were 463,792 bp based on 494,582 aligned reads. A total of 51 genes was annotated including 32 protein-coding genes, 16 tRNA genes, and three rRNA genes. In a comparison of B. falcatum and carrot (Daucus carota) revealed that the former species has four exclusive genes, but lacks six genes present in the latter. The compositional structure and phylogenetic relationships indicated that the mitochondrial genome of B. falcatum is similar to that of D. carota.Capitulum mitella (Crustacea Cirripedia) is an important stalked barnacle. The first mitochondrial genome of C. mitella from China was presented, which is a circular molecule of 15,930 bp in length and AT content is 64.4%. It encodes 37 genes, including 13 PCGs, 22 tRNAs, and two rRNAs, which is consistent with most barnacles species reported. There are 15 genes encoded on the light strand and 22 genes encoded on the heavy strand. Identical to most barnacles species reported, srRNA and lrRNA genes are adjacent and separated only by trnV gene. Phylogenetic trees showed that C. mitella clustered with Pollicipes polymerus, indicating Pollicipedidae is monophyletic. However, Scalpelliformes was not monophyletic from the phylogenetic tree. From the level of order, the Lepadiformes was located at the base of the phylogenetic tree, indicating that its divergence time was earlier than Scalpelliformes. The results provided more insights into phylogenetic consideration at the genomic level within superorder Thoracica.Rosa cymosa is a traditional medicinal and ornamental plant in China. Here, we report the complete chloroplast genome of R. cymosa. The chloroplast genome is 156,607 bp in length with 37.48% GC content, containing a small single-copy (SSC) region (18,763 bp), a large single-copy (LSC) region (85,722 bp), and a pair of inverted repeats (IRs 26,061 bp each). A total of 139 genes were predicted, including 92 protein-coding genes, eight ribosomal RNA genes, and 39 tRNA genes. Phylogenetic analysis based on chloroplast genomes of 16 plant species shows that R. cymosa is closest to R. chiensis 'Old Bush' and R. lucidissima. These complete chloroplast genomes can be subsequently used for researches of Rosaceae.In order to supply genetic information of Juniperus saltuaria, we reported the complete chloroplast genome sequence based on high-throughput sequencing data. The whole chloroplast genome was 128,099 bp long with an asymmetric base composition (32.9% A, 16.9% C, 18.1% G and 32.1% T). The genome annotation predicted a total of 116 genes, including 82 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The neighbor-joining phylogenetic analysis based on 45 complete chloroplast genome sequences showed that J. saltuaria was more closely related to the congeneric J. recurva. The assembled chloroplast genome of J. saltuaria will provide useful genomic data both for the phylogenetic research of Juniperus and the conservation of this species.The complete mitochondrial genome (mitogenome) of the assassin bug, Sycanus croceovittatus, was sequenced and analyzed in the present study. This mitogenome spans 15,644 bp in size with a high A + T content (71.7%), containing 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a putative control region. All protein-coding genes are initiated by ATN codons expect ND1 use GTG as start codons and terminated with TAG or TAA, expect COX3 use a single T-- residue as the stop codon. All tRNAs have the typical clover-leaf like structures except for tRNASer(AGN) . A phylogenetic analysis of S. croceovittatus and 33 other assassin bugs is also presented using 13 protein-coding genes and 2 rRNA genes. The result supports the monophyly of Harpactorinae and the sister relationship between S. croceovittatus and Agriosphodrus dohrni.