Coatesmccarty1345

Shiga toxin-producing Escherichia coli (STEC) can cause severe human illness, which are frequently linked to the consumption of contaminated beef or dairy products. However, recent outbreaks associated with contaminated flour and undercooked dough in the United States and Canada, highlight the potential of plant based food as transmission routes for STEC. In Germany STEC has been isolated from flour, but no cases of illness have been linked to flour. In this study, we characterized 123 STEC strains isolated from flour and flour products collected between 2015 and 2019 across Germany. In addition to determination of serotype and Shiga toxin subtype, whole genome sequencing (WGS) was used for isolates collected in 2018 to determine phylogenetic relationships, sequence type (ST), and virulence-associated genes (VAGs). We found a high diversity of serotypes including those frequently associated with human illness and outbreaks, such as O157H7 (stx2c/d, eae), O145H28 (stx2a, eae), O146H28 (stx2b), and O103H2 (stx1a, eae). Serotypes O187H28 (ST200, stx2g) and O154H31 (ST1892, stx1d) were most prevalent, but are rarely linked to human cases. However, WGS analysis revealed that these strains, as well as, O156H25 (ST300, stx1a) harbour high numbers of VAGs, including eae, nleB and est1a/sta1. Although STEC-contaminated flour products have yet not been epidemiologically linked to human clinical cases in Germany, this study revealed that flour can serve as a vector for STEC strains with a high pathogenic potential. Further investigation is needed to determine the sources of STEC contamination in flour and flour products particularly in regards to these rare serotypes.Eutrophication of coastal and nearshore receiving environments downstream of intensive agricultural production areas is a global issue. The Reef 2050 Water Quality Improvement Plan (2017-2022) sets ambitious targets for reducing pollutant loads entering the Great Barrier Reef from contributing agricultural catchments. At a regional scale, the Wet Tropics end-of-catchment target load reduction for dissolved inorganic nitrogen (DIN) is 60% from the 2012-2013 anthropogenic load level. However, not even with the combined efforts of the Reef Regulations (December 2019) mandate and adoption of best practice nutrient management on farm, is it likely that these DIN targets will be reached. Thus, there is a need for innovative and cost-effective approaches to deliver further water quality improvement. Transitioning low-lying, marginal sugarcane land to alternative land uses that require lower or no nitrogen inputs, but still provide farmers with income streams, is a potentially attractive solution. In this study, a mu addition to private market funding mechanisms could be appropriate for supporting such land use transitions. These approaches need to be tested and refined via targeted pilot projects, as part of a whole-of-landscape approach to achieve broader reef water quality targets.We studied marine litter ingestion in 380 neonate sea turtles that washed ashore dead onto Florida's central Atlantic coast (USA) following onshore winds. Our sample of "washbacks" included 284 loggerheads (Caretta caretta), 95 green turtles (Chelonia mydas), and one hawksbill (Eretmochelys imbricata). Of these, 78.7% had ingested plastics and 45.3% had ingested tar. There was a significant relationship between turtles' carapace length and total mass of ingested plastic. Ingested plastics included microplastics ( less then 5 mm) and larger sizes up to 25% of carapace length. Washbacks' body condition indices were significantly poorer than condition indices of wild turtles captured at sea. Washbacks showed a negative association between plastic load and body condition index, evidence that high plastic loads resulted in diminished nutrition, with possible effects on somatic growth, stage duration, and survivorship. Evidence points to plastics ingestion being an important source of population-level effects in neonate sea turtles.This study assessed the concentrations, sources, and risks of polycyclic aromatic hydrocarbons (PAHs) in sediments from the Rivers Niger, Ase and Forcados in the western Niger Delta. The concentrations of PAHs (in μg kg-1 dry weight), as determined by gas chromatography-mass spectrometry, in sediments from these rivers varied from 2400 to 19,000, 2930 to 16,100, and from 1620 to 19,800 for the Niger, Ase and Forcados Rivers respectively. High molecular weight (HMW) PAHs were the most prevalent compounds present in these sediments. An assessment of the possible ecological and human health risks suggested high risks for both organisms and humans. The PAH source analysis suggested that sediments from these river systems were contaminated with PAHs arising from burning of biomass, gasoline/diesel emissions, burning of natural gas, and oil spillages.Anthropogenic activities have impacted the coastal region of Brazil. In the Paranaguá estuarine complex (PEC), Cananéia-Iguape estuarine-lagoon complex (CIELC), and Santos-São Vicente estuarine complex (SSVEC), such activities occur across differing scales. In these estuaries, the concentrations of mercury (Hg) and stable nitrogen isotopes (δ15N) were investigated in sediments and marine organisms including benthic macrofauna, fish and cetaceans. Hg bioconcentration occurred primarily in cetaceans, polychaetes and molluscs, and reflects the impact of anthropogenic activities in the regions studied (PEC and SSVEC > CIELC). Bioaccumulation occurred in most of the studied specimens, but biodilution of Hg was observed in the trophic webs of SSVEC and CIELC. Despite measuring lower Hg levels than in studies carried out in the northern hemisphere, the results highlight potential concerns for public and environmental health in these highly productive coastal regions in the southwestern Atlantic which are important for fishing and various economic activities.Glacier-fed aquatic ecosystems provide habitats for diverse and active bacterial communities. However, the environmental vulnerabilities of co-existing water and sediment bacterial communities in these ecosystems remain unclear. Here, 16S rRNA gene sequencing was used to investigate co-existing bacterial communities in paired water and sediment samples from multiple rivers and lakes that are mainly fed by glaciers from the southeast Tibetan Plateau. Overall, the bacterial communities were dissimilar between the water and sediment, which indicated that there were limited interactions between them. find more Bacterial diversity was greatest in the sediments, where it was mainly driven by changes in nitrogen compounds and pH. Meanwhile water bacterial diversity was more susceptible to evapotranspiration, elevation, and mean annual temperature. Water samples contained higher proportions of Proteobacteria and Bacteroidetes, while sediment harbored higher proportions of Acidobacteria, Actinobacteria, Chloroflexi, Firmicutes, Planctomycetes, Cyanobacteria, and Gemmatimonadetes.