Billefriedrichsen0860

G-quadruplex assemblies are a promising tool for self-assembling π-stacked chromophore arrays to better understand their photophysics. We have shown that coupling a single guanine moiety to terrylenediimide (TDI) produces a structure (GTDI) that self-assembles in tetrahydrofuran (THF) into a nearly monodisperse guanine-quadruplex structure having 16 π-stacked layers (GTDI4)16. The TDI surfaces were determined to have a high degree of cofacial overlap and underwent quantitative symmetry-breaking charge separation (SB-CS) upon photoexcitation. Here, we more deeply examine the relationship between solvent and aggregate formation and develop insights into structure-function relationships over a variety of solvent polarities and hydrogen-bonding capabilities. At high concentrations, GTDI assembles into guanine-quadruplex structures (GTDI4)16 in THF and toluene, as well as (GTDI4)9 in pyridine and benzonitrile. Transient absorption spectroscopy shows that SB-CS occurs in all solvents, regardless of their static dielectric constants, but the SB-CS yield is determined by structure. Solvent polarity independent SB-CS generation is also observed in GTDI films, where there is a complete absence of solvent.Oxygen vacancies are ubiquitous in TiO2 and play key roles in catalysis and magnetism applications. Despite being extensively investigated, the electronic structure of oxygen vacancies in TiO2 remains controversial both experimentally and theoretically. Here, we report a study of a neutral oxygen vacancy in TiO2 using state-of-the-art quantum chemical electronic structure methods. We find that the ground state is a color center singlet state in both the rutile and the anatase phases of TiO2. Specifically, embedded coupled cluster with singles, doubles, and perturbative triples calculations find, for an oxygen vacancy in rutile, that the lowest triplet state energy is 0.6 eV above the singlet state, and in anatase, the triplet state energy is higher by 1.4 eV. Our study provides fresh insights into the electronic structure of the oxygen vacancy in TiO2, clarifying earlier controversies and potentially inspiring future studies of defects with correlated wave function theories.The on-top pair density [Πr] is a local quantum-chemical property that reflects the probability of two electrons of any spin to occupy the same position in space. Being the simplest quantity related to the two-particle density matrix, the on-top pair density is a powerful indicator of electron correlation effects, and as such, it has been extensively used to combine density functional theory and multireference wavefunction theory. The widespread application of Π(r) is currently hindered by the need for post-Hartree-Fock or multireference computations for its accurate evaluation. In this work, we propose the construction of a machine learning model capable of predicting the complete active space self-consistent field (CASSCF)-quality on-top pair density of a molecule only from its structure and composition. Our model, trained on the GDB11-AD-3165 database, is able to predict with minimal error the on-top pair density of organic molecules, bypassing completely the need for ab initio computations. The accuracy of the regression is demonstrated using the on-top ratio as a visual metric of electron correlation effects and bond-breaking in real-space. In addition, we report the construction of a specialized basis set, built to fit the on-top pair density in a single atom-centered expansion. This basis, cornerstone of the regression, could be potentially used also in the same spirit of the resolution-of-the-identity approximation for the electron density.Stabilizing mechanisms of three possible isomers (phenolate-keto, phenolate-enol, and phenol-enolate) of the oxyluciferin anion hydrated with quantum explicit water molecules in the first singlet excited state were investigated using first-principles Born-Oppenheimer molecular dynamics simulations for up to 1.8 ns (or 3.7 × 106 MD steps), revealing that the surrounding water molecules were distributed to form clear single-layered structures for phenolate-keto and multi-layered structures for phenolate-enol and phenol-enolate isomers. The isomers employed different stabilizing mechanisms compared to the ground state. Only the phenolate-keto isomer became attracted to the water molecules in its excited state and was stabilized by increasing the number of hydrogen bonds with nearby water molecules. The most stable isomer in the excited state was the phenolate-keto, and the phenolate-enol and phenol-enolate isomers were higher in energy by ∼0.38 eV and 0.57 eV, respectively, than the phenolate-keto. This was in contrast to the case of ground state in which the phenolate-enol was the most stable isomer.A single solid tumor, composed of nearly identical cells, exhibits heterogeneous dynamics. Dynamics of cells in the core is glass-like, whereas those in the periphery undergoes diffusive or super-diffusive behavior. Quantification of heterogeneity using the mean square displacement or the self-intermediate scattering function, which involves averaging over the cell population, hides the complexity of the collective movement. Using the t-distributed stochastic neighbor embedding (t-SNE), a popular unsupervised machine learning dimensionality reduction technique, we show that the phase space structure of an evolving colony of cells, driven by cell division and apoptosis, partitions into nearly disjoint sets composed principally of the core and periphery cells. The non-equilibrium phase separation is driven by the differences in the persistence of self-generated active forces induced by cell division. Extensive heterogeneity revealed by t-SNE paves the way toward understanding the origins of intratumor heterogeneity using experimental imaging data.Finite temperature auxiliary field-based quantum Monte Carlo methods, including determinant quantum Monte Carlo and Auxiliary Field Quantum Monte Carlo (AFQMC), have historically assumed pivotal roles in the investigation of the finite temperature phase diagrams of a wide variety of multidimensional lattice models and materials. Despite their utility, however, these techniques are typically formulated in the grand canonical ensemble, which makes them difficult to apply to condensates such as superfluids and difficult to benchmark against alternative methods that are formulated in the canonical ensemble. Working in the grand canonical ensemble is furthermore accompanied by the increased overhead associated with having to determine the chemical potentials that produce desired fillings. Given this backdrop, in this work, we present a new recursive approach for performing AFQMC simulations in the canonical ensemble that does not require knowledge of chemical potentials. To derive this approach, we exploit the convenient fact that AFQMC solves the many-body problem by decoupling many-body propagators into integrals over one-body problems to which non-interacting theories can be applied. We benchmark the accuracy of our technique on illustrative Bose and Fermi-Hubbard models and demonstrate that it can converge more quickly to the ground state than grand canonical AFQMC simulations. We believe that our novel use of HS-transformed operators to implement algorithms originally derived for non-interacting systems will motivate the development of a variety of other methods and anticipate that our technique will enable direct performance comparisons against other many-body approaches formulated in the canonical ensemble.The role of cohesive r-4 interactions on the existence of a vapor phase and the formation of vapor-liquid equilibria is investigated by performing molecular simulations for the n-4 potential. The cohesive r-4 interactions delay the emergence of a vapor phase until very high temperatures. The critical temperature is up to 5 times higher than normal fluids, as represented by the Lennard-Jones potential. The greatest overall influence on vapor-liquid equilibria is observed for the 5-4 potential, which is the lowest repulsive limit of the potential. Increasing n initially mitigates the influence of r-4 interactions, but the moderating influence declines for n > 12. A relationship is reported between the critical temperature and the Boyle temperature, which allows the critical temperature to be determined for a given n value. The n-4 potential could provide valuable insight into the behavior of non-conventional materials with both very low vapor pressures at elevated temperatures and highly dipolar interactions.Thermally activated triplet-to-singlet upconversion is attractive from both fundamental science and exciton engineering, but controlling the process from molecular configuration is still unrevealed. this website In particular, the flexibility of the freedom of molecular geometry is of major importance to understand the kinetics of the phonon-induced upconversion. Here, we focus on two linearly connected donor-acceptor molecules, 9,9-dimethyl-9,10-dihydroacridine-2,4,6-triphenyl-1,3,5-triazine (DMAC-TRZ) and hexamethylazatriangulene-2,4,6-triphenyl-1,3,5-triazine (HMAT-TRZ), as the model system. While DMAC-TRZ possesses a rotational degree of freedom in the dihedral angle between the donor and acceptor moieties, i.e., C-N bond in tertiary amine, the rotation is structurally restricted in HMAT-TRZ. The rotationally flexible DMAC-TRZ showed significant triplet-to-singlet upconversion caused by thermal activation. On the other hand, the rotation-restricted HMAT-TRZ showed negligible thermal upconversion efficiency. We elaborate on the origin of the photophysical properties from the viewpoint of the geometries in the excited states using time-resolved infrared spectroscopy and quantum chemical calculations. We uncovered that the structural restriction of the intramolecular flexibility significantly affects the optimized geometry and phonon modes coupled to the spin conversion. As a result of the rotation restriction, the spin flipping in HMAT-TRZ was coupled to bending motion instead of the rotation. In contrast, the free rotation fluctuation in the DMAC-TRZ mixes local-excitation and charge-transfer characters, leading to successful activation of the delayed fluorescence as well as the reverse intersystem crossing. Our discovery sheds light on the mechanism of the triplet-to-singlet upconversion, providing a microscopic strategy to control the optoelectronic properties from a molecular viewpoint.The infrared pulses used to generate nonlinear signals from a vibrational probe can cause heating via solvent absorption. Solvent absorption followed by rapid vibrational relaxation produces unwanted heat signals by creating spectral shifts of the solvent and probe absorptions. The signals are often isolated by "chopping," i.e., alternately blocking one of the incident pulses. This method is standard in pump-probe transient absorption experiments. As less heat is deposited into the sample when an incident pulse is blocked, the heat-induced spectral shifts give rise to artificial signals. Here, we demonstrate a new method that eliminates heat induced signals using pulse shaping to control pulse spectra. This method is useful if the absorption spectrum of the vibrational probe is narrow compared to the laser bandwidth. By using a pulse shaper to selectively eliminate only frequencies of light resonant with the probe absorption during the "off" shot, part of the pulse energy, and the resulting heat, is delivered to the solvent without generating the nonlinear signal.